Transcript: lnc-LPCAT1-4:2

Basic information

LNCipedia transcript ID: lnc-LPCAT1-4:2 
LNCipedia gene ID: lnc-LPCAT1-4
Location (hg19): chr5:1626902-1634131
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1287 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1111:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.9675 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LPCAT1-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LPCAT1-3:30
4.1 lnc-LPCAT1-3:30
5.0 lnc-LPCAT1-3:30
5.1 lnc-IRX2-13:2
5.2 lnc-LPCAT1-4:2