Transcript: lnc-LPCAT1-4:25

Basic information

LNCipedia transcript ID: lnc-LPCAT1-4:25 
LNCipedia gene ID: lnc-LPCAT1-4
Location (hg19): chr5:1589143-1594735
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 736 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT100043
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 148.9931 coding 
CPAT coding probability 64.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LPCAT1-4:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LPCAT1-3:21
4.0 lnc-LPCAT1-3:21
4.1 lnc-LPCAT1-3:21
5.0 lnc-LPCAT1-3:21
5.1 lnc-IRX2-13:25
5.2 lnc-LPCAT1-4:25