Transcript: lnc-LRCOL1-2:14

Basic information

LNCipedia transcript ID: lnc-LRCOL1-2:14 
LNCipedia gene ID: lnc-LRCOL1-2
Location (hg19): chr12:133179736-133186983
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 825 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000544018.2; RP13-554M15.6-002; OTTHUMT00000397684.2; NONHSAT032104
Alternative gene names: ENSG00000204583.5; RP13-554M15.6; OTTHUMG00000168043.2; LRCOL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.2405 non-coding 
CPAT coding probability 74.11% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRCOL1-2:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POLE-2:3
4.0 lnc-POLE-2:3
4.1 lnc-POLE-2:3
5.0 lnc-POLE-2:3
5.1 lnc-LRCOL1-2:3
5.2 lnc-LRCOL1-2:14