Transcript: lnc-LRCOL1-2:15

Basic information

LNCipedia transcript ID: lnc-LRCOL1-2:15 
LNCipedia gene ID: lnc-LRCOL1-2
Location (hg19): chr12:133180601-133182850
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 921 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000545517; ENST00000545517.1; RP13-554M15.6-003; OTTHUMT00000397683.1; NONHSAT032106
Alternative gene names: ENSG00000204583; RP13-554M15.6; ENSG00000204583.5; OTTHUMG00000168043.2; LRCOL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.2734 non-coding 
CPAT coding probability 73.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRCOL1-2:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLE-1:3
3.1 lnc-POLE-2:4
4.0 lnc-POLE-2:4
4.1 lnc-POLE-2:4
5.0 lnc-POLE-2:4
5.1 lnc-LRCOL1-2:4
5.2 lnc-LRCOL1-2:15