Transcript: lnc-LRCOL1-2:21

Basic information

LNCipedia transcript ID: lnc-LRCOL1-2:21 
LNCipedia gene ID: lnc-LRCOL1-2
Location (hg19): chr12:133179738-133181405
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 613 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000376608; ENST00000376608.4; RP13-554M15.6-201; NONHSAT032105
Alternative gene names: ENSG00000204583; RP13-554M15.6; ENSG00000204583.5; OTTHUMG00000168043.2; LRCOL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.2405 non-coding 
CPAT coding probability 64.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRCOL1-2:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLE-1:4
3.1 lnc-POLE-2:5
4.0 lnc-POLE-2:5
4.1 lnc-POLE-2:5
5.0 lnc-POLE-2:5
5.1 lnc-LRCOL1-2:10
5.2 lnc-LRCOL1-2:21