Transcript: lnc-LRCOL1-3:7

Basic information

LNCipedia transcript ID: lnc-LRCOL1-3:7 
LNCipedia gene ID: lnc-LRCOL1-3
Ensembl Gene ID: ENSG00000277186
Ensembl Transcript ID: ENST00000613771
Location (hg19): chr12:133169617-133170284
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 668 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613771.1
Alternative gene names: ENSG00000277186.1; RP13-554M15.8; AC131212.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 59.0767 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRCOL1-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-POLE-3:4
4.1 lnc-POLE-3:4
5.0 lnc-POLE-3:4
5.1 lnc-LRCOL1-3:3
5.2 lnc-LRCOL1-3:7