Transcript: lnc-LRFN2-3:2

Basic information

LNCipedia transcript ID: lnc-LRFN2-3:2 
LNCipedia gene ID: lnc-LRFN2-3
Ensembl Gene ID: ENSG00000227131
Ensembl Transcript ID: ENST00000444731
Location (hg19): chr6:40239305-40243976
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011485; ENST00000444731; ENST00000444731.1; RP11-552E20.1-001; OTTHUMT00000040480.1; NONHSAT112458
Alternative gene names: XLOC_005711; linc-MOCS1-1; ENSG00000227131; RP11-552E20.1; ENSG00000227131.1; OTTHUMG00000014657.1; AL139275.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.9493 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRFN2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRFN2-3:2
3.1 lnc-LRFN2-3:2
4.0 lnc-LRFN2-3:2
4.1 lnc-LRFN2-3:2
5.0 lnc-LRFN2-3:2
5.1 lnc-TREML2-37:2
5.2 lnc-LRFN2-3:2