Transcript: lnc-LRRC18-2:1

Basic information

LNCipedia transcript ID: lnc-LRRC18-2:1 
LNCipedia gene ID: lnc-LRRC18-2
Location (hg19): chr10:50042957-50044714
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 511 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000414178.1; RP11-563N6.4-001; OTTHUMT00000047954.1; NONHSAT013280
Alternative gene names: ENSG00000237241.1; RP11-563N6.4; OTTHUMG00000018178.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.5251 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC18-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC18-2:1
4.0 lnc-LRRC18-2:1
4.1 lnc-LRRC18-2:1
5.0 lnc-LRRC18-2:1
5.1 lnc-LRRC18-2:1
5.2 lnc-LRRC18-2:1