Transcript: lnc-LRRC31-1:2

Basic information

LNCipedia transcript ID: lnc-LRRC31-1:2 
LNCipedia gene ID: lnc-LRRC31-1
Location (hg19): chr3:169672016-169684522
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1737 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00005403
Alternative gene names: XLOC_003323; linc-LRRC31-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.4587 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC31-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC31-1:1
3.1 lnc-LRRC31-1:2
4.0 lnc-LRRC31-1:2
4.1 lnc-LRRC31-1:2
5.0 lnc-LRRC31-1:2
5.1 lnc-TBL1XR1-56:1
5.2 lnc-LRRC31-1:2