Transcript: lnc-LRRC32-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC32-1:1 
LNCipedia gene ID: lnc-LRRC32-1
Ensembl Gene ID: ENSG00000254810
Ensembl Transcript ID: ENST00000531511
Location (hg19): chr11:76365213-76367756
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 651 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531511; ENST00000531511.1; RP11-672A2.4-001; OTTHUMT00000383014.1; NONHSAT023177
Alternative gene names: ENSG00000254810; RP11-672A2.4; ENSG00000254810.1; OTTHUMG00000165260.1; AP001189.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -206.9228 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC32-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC32-1:1
3.1 lnc-LRRC32-1:1
4.0 lnc-LRRC32-1:1
4.1 lnc-LRRC32-1:1
5.0 lnc-LRRC32-1:1
5.1 lnc-WNT11-11:1
5.2 lnc-LRRC32-1:1