Transcript: lnc-LRRC3C-1:4

Basic information

LNCipedia transcript ID: lnc-LRRC3C-1:4 
LNCipedia gene ID: lnc-LRRC3C-1
Location (hg19): chr17:38092115-38096062
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 505 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025381; NONHSAT053501
Alternative gene names: XLOC_012196; linc-LOC728129-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.4371 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC3C-1:4 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC3C-1:1
3.1 lnc-LRRC3C-1:4
4.0 lnc-LRRC3C-1:4
4.1 lnc-LRRC3C-1:4
5.0 lnc-LRRC3C-1:4
5.1 lnc-THRA-5:5
5.2 lnc-LRRC3C-1:4