Transcript: lnc-LRRC47-78:27

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:27 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg19): chr1:3659683-3662802
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 704 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000544565; ENST00000544565.1; TP73-AS1-201
Alternative gene names: ENSG00000227372; TP73-AS1; ENSG00000227372.4; OTTHUMG00000003414.1; ENSG00000227372.6; PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.7162 non-coding 
CPAT coding probability 87.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC47-78:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC47-1:4
3.1 lnc-LRRC47-1:4
4.0 TP73-AS1:17
4.1 TP73-AS1:17
5.0 TP73-AS1:17
5.1 lnc-CLSTN1-78:27
5.2 lnc-LRRC47-78:27