Transcript: lnc-LRRC56-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC56-1:1 
LNCipedia gene ID: lnc-LRRC56-1
Ensembl Gene ID: ENSG00000254739
Ensembl Transcript ID: ENST00000526431
Location (hg19): chr11:528907-529659
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526431.1; RP13-46H24.1-001; OTTHUMT00000386374.1; NONHSAT017267
Alternative gene names: ENSG00000254739.1; RP13-46H24.1; OTTHUMG00000165819.1; AC137894.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.7651 non-coding 
CPAT coding probability 20.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC56-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC56-1:1
4.0 lnc-LRRC56-1:1
4.1 lnc-LRRC56-1:1
5.0 lnc-LRRC56-1:1
5.1 lnc-OR51M1-128:11
5.2 lnc-LRRC56-1:1