Transcript: lnc-LRRC71-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC71-1:1 
LNCipedia gene ID: lnc-LRRC71-1
Location (hg19): chr1:157155178-157157195
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 471 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000457239; ENST00000457239.1; RP11-71G12.1-001; OTTHUMT00000099026.1; NONHSAT006932; FPKM1_group_1528_transcript_1
Alternative gene names: ENSG00000229961; RP11-71G12.1; ENSG00000229961.1; OTTHUMG00000041327.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.6097 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC71-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC71-1:1
3.1 lnc-LRRC71-1:1
4.0 lnc-LRRC71-1:1
4.1 lnc-LRRC71-1:1
5.0 lnc-LRRC71-1:1
5.1 lnc-PMF1-BGLAP-22:1
5.2 lnc-LRRC71-1:1