Transcript: lnc-LRRFIP2-1:1

Basic information

LNCipedia transcript ID: lnc-LRRFIP2-1:1 
LNCipedia gene ID: lnc-LRRFIP2-1
Location (hg19): chr3:37400868-37408234
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5351 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000498878
Alternative gene names: ENSG00000246020


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.7245 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRFIP2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRFIP2-1:1
3.1 lnc-LRRFIP2-1:1
4.0 lnc-LRRFIP2-1:1
4.1 lnc-LRRFIP2-1:1
5.0 lnc-LRRFIP2-1:1
5.1 lnc-SEC22C-47:1
5.2 lnc-LRRFIP2-1:1