Transcript: lnc-LRRK1-3:1

Basic information

LNCipedia transcript ID: lnc-LRRK1-3:1 
LNCipedia gene ID: lnc-LRRK1-3
Location (hg19): chr15:101835623-101838894
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2338 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023567; NONHSAT051168
Alternative gene names: XLOC_011390; linc-OR4F6-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.9025 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRK1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRK1-2:1
3.1 lnc-LRRK1-3:1
4.0 lnc-LRRK1-3:1
4.1 lnc-LRRK1-3:1
5.0 lnc-LRRK1-3:1
5.1 lnc-OR4F15-10:9
5.2 lnc-LRRK1-3:1