Transcript: lnc-LRRK1-3:10

Basic information

LNCipedia transcript ID: lnc-LRRK1-3:10 
LNCipedia gene ID: lnc-LRRK1-3
Location (hg19): chr15:101835606-101839218
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2679 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259172.1|HBMT00000494891.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.7371 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRK1-3:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LRRK1-3:10
5.0 lnc-LRRK1-3:10
5.1 lnc-OR4F15-10:7
5.2 lnc-LRRK1-3:10