Transcript: lnc-LSM11-2:1

Basic information

LNCipedia transcript ID: lnc-LSM11-2:1 
LNCipedia gene ID: lnc-LSM11-2
Ensembl Gene ID: ENSG00000253673
Ensembl Transcript ID: ENST00000522975
Location (hg19): chr5:157602404-157627024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 681 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522975; ENST00000522975.1; CTC-436K13.1-001; OTTHUMT00000373930.1; NONHSAT104788
Alternative gene names: ENSG00000253673; CTC-436K13.1; ENSG00000253673.1; OTTHUMG00000163515.1; AC025437.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.8207 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LSM11-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LSM11-2:1
3.1 lnc-LSM11-2:1
4.0 lnc-LSM11-2:1
4.1 lnc-LSM11-2:1
5.0 lnc-LSM11-2:1
5.1 lnc-MRPL22-25:1
5.2 lnc-LSM11-2:1