Transcript: lnc-LYPD6-2:2

Basic information

LNCipedia transcript ID: lnc-LYPD6-2:2 
LNCipedia gene ID: lnc-LYPD6-2
Location (hg19): chr2:150683558-150704743
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003900; NONHSAT074915
Alternative gene names: XLOC_001703; linc-TNFAIP6-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.8787 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYPD6-2:2 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LYPD6-2:1
3.1 lnc-LYPD6-2:2
4.0 lnc-LYPD6-2:2
4.1 lnc-LYPD6-2:2
5.0 lnc-LYPD6-2:2
5.1 lnc-KCNJ3-41:23
5.2 lnc-LYPD6-2:2