Transcript: lnc-LYPD6-2:3

Basic information

LNCipedia transcript ID: lnc-LYPD6-2:3 
LNCipedia gene ID: lnc-LYPD6-2
RefSeq ID: NR_110240
Location (hg19): chr2:150443872-150704748
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 861 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110240; NR_110240.1
Alternative gene names: LOC101929231


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.4978 non-coding 
CPAT coding probability 46.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LYPD6-2:3 yes no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYPD6-2:3
4.0 lnc-LYPD6-2:3
4.1 lnc-LYPD6-2:3
5.0 lnc-LYPD6-2:3
5.1 lnc-KCNJ3-41:8
5.2 lnc-LYPD6-2:3