Transcript: lnc-LYPD6-2:9

Basic information

LNCipedia transcript ID: lnc-LYPD6-2:9 
LNCipedia gene ID: lnc-LYPD6-2
Location (hg19): chr2:150443852-150600428
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 733 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231969.1|FTMT20700028935.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.0038 non-coding 
CPAT coding probability 31.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYPD6-2:9 yes no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LYPD6-2:9
5.0 lnc-LYPD6-2:9
5.1 lnc-KCNJ3-41:6
5.2 lnc-LYPD6-2:9