Transcript: lnc-MACC1-1:6

Basic information

LNCipedia transcript ID: lnc-MACC1-1:6 
LNCipedia gene ID: lnc-MACC1-1
Ensembl Gene ID: ENSG00000243004
Ensembl Transcript ID: ENST00000449573
Location (hg19): chr7:19958615-20042545
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 804 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449573.1; AC005062.2-006; OTTHUMT00000326631.1; NONHSAT119397; ENST00000449573.5
Alternative gene names: ENSG00000243004.1; AC005062.2; OTTHUMG00000152535.1; ENSG00000243004.5; AC005062.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.915 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MACC1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MACC1-1:6
4.0 lnc-MACC1-1:6
4.1 lnc-MACC1-1:6
5.0 lnc-MACC1-1:6
5.1 lnc-SNX13-16:13
5.2 lnc-MACC1-1:6