Transcript: lnc-MAFB-2:6

Basic information

LNCipedia transcript ID: lnc-MAFB-2:6 
LNCipedia gene ID: lnc-MAFB-2
Location (hg19): chr20:38284901-38287039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 434 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT079726; FPKM1_group_19193_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.1033 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAFB-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAFB-2:6
4.0 lnc-MAFB-2:6
4.1 lnc-MAFB-2:6
5.0 lnc-MAFB-2:6
5.1 lnc-EIF6-61:6
5.2 lnc-MAFB-2:6