Transcript: lnc-MAGEA1-1:3

Basic information

LNCipedia transcript ID: lnc-MAGEA1-1:3 
LNCipedia gene ID: lnc-MAGEA1-1
Ensembl Gene ID: ENSG00000273877
Ensembl Transcript ID: ENST00000620734
Location (hg19): chrX:152435027-152439725
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1222 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620734.1
Alternative gene names: ENSG00000273877.4; RP11-635O16.2; AC236972.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.5 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAGEA1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MAGEA1-1:3
4.1 lnc-MAGEA1-1:3
5.0 lnc-MAGEA1-1:3
5.1 lnc-MAGEA11-40:3
5.2 lnc-MAGEA1-1:3