Transcript: lnc-MAGED4-3:1

Basic information

LNCipedia transcript ID: lnc-MAGED4-3:1 
LNCipedia gene ID: lnc-MAGED4-3
Ensembl Gene ID: ENSG00000179028
Ensembl Transcript ID: ENST00000375625
Location (hg19): chrX:51942963-51946358
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2369 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000375625.3
Alternative gene names: ENSG00000179028.4; RP11-363G10.2; AC245177.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.5997 non-coding 
CPAT coding probability 29.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAGED4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-363G10.2.1-3:1
4.1 lnc-RP11-363G10.2.1-3:1
5.0 lnc-RP11-363G10.2.1-3:1
5.1 lnc-TSR2-46:1
5.2 lnc-MAGED4-3:1