Transcript: lnc-MAK16-3:1

Basic information

LNCipedia transcript ID: lnc-MAK16-3:1 
LNCipedia gene ID: lnc-MAK16-3
Ensembl Gene ID: ENSG00000253108
Ensembl Transcript ID: ENST00000522460
Location (hg19): chr8:34085957-34204249
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522460; ENST00000522460.1; RP1-84O15.2-001; OTTHUMT00000376665.1; NONHSAT125990
Alternative gene names: ENSG00000253108; RP1-84O15.2; ENSG00000253108.1; OTTHUMG00000163990.1; AC090993.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.5086 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAK16-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAK16-3:1
3.1 lnc-MAK16-3:1
4.0 lnc-MAK16-3:1
4.1 lnc-MAK16-3:1
5.0 lnc-MAK16-3:1
5.1 lnc-KCNU1-55:1
5.2 lnc-MAK16-3:1