Transcript: lnc-MAN2C1-2:1

Basic information

LNCipedia transcript ID: lnc-MAN2C1-2:1 
LNCipedia gene ID: lnc-MAN2C1-2
Location (hg19): chr15:75521659-75526292
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 634 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000567079.1; RP11-69H7.2-001; OTTHUMT00000419794.1; NONHSAT047300
Alternative gene names: ENSG00000260660.1; RP11-69H7.2; OTTHUMG00000172668.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.3849 non-coding 
CPAT coding probability 75.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MAN2C1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAN2C1-2:1
4.0 lnc-MAN2C1-2:1
4.1 lnc-MAN2C1-2:1
5.0 lnc-MAN2C1-2:1
5.1 lnc-PEAK1-43:1
5.2 lnc-MAN2C1-2:1