Transcript: lnc-MAP1LC3B2-28:21

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:21 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg19): chr12:116985551-116988960
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 988 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020583; NONHSAT030952
Alternative gene names: XLOC_009898; linc-MAP1LC3B2-1; FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.1912 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:21 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP1LC3B2-1:1
3.1 lnc-MAP1LC3B2-1:1
4.0 lnc-MAP1LC3B2-1:1
4.1 LINC00173:21
5.0 LINC00173:21
5.1 lnc-MAP1LC3B2-14:21
5.2 lnc-MAP1LC3B2-28:21