Transcript: lnc-MAP1LC3B2-28:24

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:24 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg19): chr12:116985911-116992186
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 732 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000547114.1; RP11-809C9.2-001; OTTHUMT00000403851.1; NONHSAT030953
Alternative gene names: ENSG00000258102.1; RP11-809C9.2; OTTHUMG00000169393.1; FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.7934 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:24 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP1LC3B2-1:2
4.0 lnc-MAP1LC3B2-1:2
4.1 LINC00173:24
5.0 LINC00173:24
5.1 lnc-MAP1LC3B2-14:24
5.2 lnc-MAP1LC3B2-28:24