Transcript: lnc-MAP1LC3B2-28:25

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:25 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg19): chr12:116987994-116989617
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1284 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020584; NONHSAT030954
Alternative gene names: XLOC_009898; linc-MAP1LC3B2-1; FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.4291 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:25 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP1LC3B2-1:2
3.1 lnc-MAP1LC3B2-1:3
4.0 lnc-MAP1LC3B2-1:3
4.1 LINC00173:25
5.0 LINC00173:25
5.1 lnc-MAP1LC3B2-14:25
5.2 lnc-MAP1LC3B2-28:25