Transcript: lnc-MAP1LC3B2-28:4

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-28:4 
LNCipedia gene ID: lnc-MAP1LC3B2-28
Location (hg19): chr12:116956063-116974733
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2758 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT030943
Alternative gene names: FLJ42957


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2084 non-coding 
CPAT coding probability 44.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-28:4 no no no no

Available literature

  1. Postler (2017), Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection., Virology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP1LC3B2-4:2
4.0 LINC00173:2
4.1 LINC00173:2
5.0 LINC00173:2
5.1 lnc-MAP1LC3B2-14:4
5.2 lnc-MAP1LC3B2-28:4