Transcript: lnc-MAP1LC3B2-29:1

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-29:1 
LNCipedia gene ID: lnc-MAP1LC3B2-29
Location (hg19): chr12:116198115-116207965
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 619 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020578; NONHSAT030918
Alternative gene names: XLOC_009894; linc-MAP1LC3B2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.1744 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-29:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-116D17.1.1-6:1
3.1 lnc-RP11-116D17.1.1-6:1
4.0 lnc-RP11-116D17.1.1-6:1
4.1 lnc-RP11-116D17.1.1-6:1
5.0 lnc-RP11-116D17.1.1-6:1
5.1 lnc-MAP1LC3B2-18:1
5.2 lnc-MAP1LC3B2-29:1