Transcript: lnc-MAP1LC3B2-4:6

Basic information

LNCipedia transcript ID: lnc-MAP1LC3B2-4:6 
LNCipedia gene ID: lnc-MAP1LC3B2-4
Ensembl Gene ID: ENSG00000257958
Ensembl Transcript ID: ENST00000548488
Location (hg19): chr12:115515130-115517958
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1538 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548488; ENST00000548488.1; RP11-25E2.1-001; OTTHUMT00000404202.1; NONHSAT140096
Alternative gene names: ENSG00000257958; RP11-25E2.1; ENSG00000257958.1; OTTHUMG00000169467.1; AC008125.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.6536 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP1LC3B2-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-116D17.1.1-4:1
3.1 lnc-RP11-116D17.1.1-4:1
4.0 lnc-RP11-116D17.1.1-4:1
4.1 lnc-RP11-116D17.1.1-4:1
5.0 lnc-RP11-116D17.1.1-4:1
5.1 lnc-MAP1LC3B2-4:4
5.2 lnc-MAP1LC3B2-4:6