Transcript: lnc-MAP3K12-1:1

Basic information

LNCipedia transcript ID: lnc-MAP3K12-1:1 
LNCipedia gene ID: lnc-MAP3K12-1
Location (hg19): chr12:53863570-53864527
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000551419.1; RP11-793H13.9-001; OTTHUMT00000407077.1; NONHSAT028469
Alternative gene names: ENSG00000258351.1; RP11-793H13.9; OTTHUMG00000170051.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.9357 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K12-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K12-1:1
4.0 lnc-MAP3K12-1:1
4.1 lnc-MAP3K12-1:1
5.0 lnc-MAP3K12-1:1
5.1 lnc-MAP3K12-5:1
5.2 lnc-MAP3K12-1:1