Transcript: lnc-MAP3K9-2:1

Basic information

LNCipedia transcript ID: lnc-MAP3K9-2:1 
LNCipedia gene ID: lnc-MAP3K9-2
Location (hg19): chr14:71394182-71693933
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 408 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000549386.2; RP1-292L20.1-001; OTTHUMT00000412818.1; NONHSAT037598
Alternative gene names: ENSG00000257692.2; RP1-292L20.1; OTTHUMG00000171285.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.0571 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K9-2:1
4.0 lnc-MAP3K9-2:1
4.1 lnc-MAP3K9-2:1
5.0 lnc-MAP3K9-2:1
5.1 lnc-ABCD4-49:1
5.2 lnc-MAP3K9-2:1