Transcript: lnc-MAP3K9-3:6

Basic information

LNCipedia transcript ID: lnc-MAP3K9-3:6 
LNCipedia gene ID: lnc-MAP3K9-3
Location (hg19): chr14:71777715-71787038
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 624 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00023126
Alternative gene names: XLOC_011064; linc-MAP3K9-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -306.8634 non-coding 
CPAT coding probability 5.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K9-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K9-2:5
3.1 lnc-MAP3K9-3:6
4.0 lnc-MAP3K9-3:6
4.1 lnc-MAP3K9-3:6
5.0 lnc-MAP3K9-3:6
5.1 lnc-ABCD4-42:17
5.2 lnc-MAP3K9-3:6