Transcript: lnc-MAP6-2:1

Basic information

LNCipedia transcript ID: lnc-MAP6-2:1 
LNCipedia gene ID: lnc-MAP6-2
Ensembl Gene ID: ENSG00000247867
Ensembl Transcript ID: ENST00000499390
RefSeq ID: NR_046090
Location (hg19): chr11:75469500-75479692
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1504 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499390; ENST00000499390.2; CTD-2530H12.1-001; OTTHUMT00000383503.1; NONHSAT023124; NR_046090; NR_046090.1
Alternative gene names: ENSG00000247867; CTD-2530H12.1; ENSG00000247867.2; OTTHUMG00000165337.1; AP001922.1; LOC283214


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.3823 non-coding 
CPAT coding probability 39.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MAP6-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP6-1:1
3.1 lnc-MAP6-2:1
4.0 lnc-MAP6-2:1
4.1 lnc-MAP6-2:1
5.0 lnc-MAP6-2:1
5.1 lnc-WNT11-10:1
5.2 lnc-MAP6-2:1