Transcript: lnc-MAP6-2:2

Basic information

LNCipedia transcript ID: lnc-MAP6-2:2 
LNCipedia gene ID: lnc-MAP6-2
Location (hg19): chr11:75469502-75479692
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1502 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00019124
Alternative gene names: XLOC_009505; linc-MAP6-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.3823 non-coding 
CPAT coding probability 39.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MAP6-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP6-1:2
3.1 lnc-MAP6-2:2
4.0 lnc-MAP6-2:2
4.1 lnc-MAP6-2:2
5.0 lnc-MAP6-2:2
5.1 lnc-WNT11-10:2
5.2 lnc-MAP6-2:2