Transcript: lnc-MAPK6-10:3

Basic information

LNCipedia transcript ID: lnc-MAPK6-10:3 
LNCipedia gene ID: lnc-MAPK6-10
Location (hg19): chr15:52980968-52981830
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 526 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023410; NONHSAT043945
Alternative gene names: XLOC_011256; linc-UNC13C-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.795 non-coding 
CPAT coding probability 3.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPK6-10:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAPK6-5:3
3.1 lnc-MAPK6-10:3
4.0 lnc-MAPK6-10:3
4.1 lnc-MAPK6-10:3
5.0 lnc-MAPK6-10:3
5.1 lnc-CCNDBP1-130:5
5.2 lnc-MAPK6-10:3