Transcript: lnc-MAPK6-8:1

Basic information

LNCipedia transcript ID: lnc-MAPK6-8:1 
LNCipedia gene ID: lnc-MAPK6-8
Location (hg19): chr15:52602996-52603608
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 568 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000570093.1; RP11-430B1.4-001; OTTHUMT00000419832.1; NONHSAT043928
Alternative gene names: ENSG00000260553.1; RP11-430B1.4; OTTHUMG00000172675.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.7857 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAPK6-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK6-8:1
4.0 lnc-MAPK6-8:1
4.1 lnc-MAPK6-8:1
5.0 lnc-MAPK6-8:1
5.1 lnc-CCNDBP1-126:3
5.2 lnc-MAPK6-8:1