Transcript: lnc-MARCH10-1:4

Basic information

LNCipedia transcript ID: lnc-MARCH10-1:4 
LNCipedia gene ID: lnc-MARCH10-1
Ensembl Gene ID: ENSG00000266411
Ensembl Transcript ID: ENST00000581596
Location (hg19): chr17:61044178-61045910
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 912 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581596.1; RP11-180P8.3-001; OTTHUMT00000444764.1; NONHSAT055187
Alternative gene names: ENSG00000266411.1; RP11-180P8.3; OTTHUMG00000179102.1; AC005972.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.3097 non-coding 
CPAT coding probability 9.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MARCH10-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MARCH10-2:1
4.0 lnc-MARCH10-2:1
4.1 lnc-MARCH10-1:4
5.0 lnc-MARCH10-1:4
5.1 lnc-CYB561-23:1
5.2 lnc-MARCH10-1:4