Transcript: lnc-MARCH11-2:1

Basic information

LNCipedia transcript ID: lnc-MARCH11-2:1 
LNCipedia gene ID: lnc-MARCH11-2
Ensembl Gene ID: ENSG00000250250
Ensembl Transcript ID: ENST00000510456
Location (hg19): chr5:15602298-15607457
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 360 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510456.1; CTD-2350J17.1-002; OTTHUMT00000366116.1; NONHSAT100583
Alternative gene names: ENSG00000250250.1; CTD-2350J17.1; OTTHUMG00000161797.1; AC010638.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.8795 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MARCH11-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MARCH11-2:1
4.0 lnc-MARCH11-2:1
4.1 lnc-MARCH11-2:1
5.0 lnc-MARCH11-2:1
5.1 lnc-CDH12-60:3
5.2 lnc-MARCH11-2:1