Transcript: lnc-MARCH4-1:1

Basic information

LNCipedia transcript ID: lnc-MARCH4-1:1 
LNCipedia gene ID: lnc-MARCH4-1
Ensembl Gene ID: ENSG00000235042
Ensembl Transcript ID: ENST00000457694
Location (hg19): chr2:217250011-217277419
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 666 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457694.1; AC098820.2-001; OTTHUMT00000337345.1; NONHSAT076800
Alternative gene names: ENSG00000235042.1; AC098820.2; OTTHUMG00000154843.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.8549 non-coding 
CPAT coding probability 5.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MARCH4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MARCH4-1:1
4.0 lnc-MARCH4-1:1
4.1 lnc-MARCH4-1:1
5.0 lnc-MARCH4-1:1
5.1 lnc-MREG-8:1
5.2 lnc-MARCH4-1:1