Transcript: lnc-MAS1-1:1

Basic information

LNCipedia transcript ID: lnc-MAS1-1:1 
LNCipedia gene ID: lnc-MAS1-1
Ensembl Gene ID: ENSG00000236823
Ensembl Transcript ID: ENST00000434562
Location (hg19): chr6:160320218-160323542
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 595 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011405; ENST00000434562; ENST00000434562.1; RP1-249F5.3-001; OTTHUMT00000042929.2; NONHSAT115885
Alternative gene names: XLOC_005526; linc-MAS1; ENSG00000236823; RP1-249F5.3; ENSG00000236823.1; OTTHUMG00000015943.2; AL035691.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.7612 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAS1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAS1-1:1
3.1 lnc-MAS1-1:1
4.0 lnc-MAS1-1:1
4.1 lnc-MAS1-1:1
5.0 lnc-MAS1-1:1
5.1 lnc-SYTL3-20:3
5.2 lnc-MAS1-1:1