Transcript: lnc-MAT2B-1:4

Basic information

LNCipedia transcript ID: lnc-MAT2B-1:4 
LNCipedia gene ID: lnc-MAT2B-1
Location (hg19): chr5:163083726-163091204
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3049_chr5:163083725-163091204_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.6364 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAT2B-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAT2B-4:1
4.0 lnc-MAT2B-1:4
4.1 lnc-MAT2B-1:4
5.0 lnc-MAT2B-1:4
5.1 lnc-MRPL22-71:2
5.2 lnc-MAT2B-1:4