Transcript: lnc-MAT2B-3:17

Basic information

LNCipedia transcript ID: lnc-MAT2B-3:17 
LNCipedia gene ID: lnc-MAT2B-3
Location (hg19): chr5:163969122-163970248
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010827; NONHSAT104941
Alternative gene names: XLOC_004626; linc-ODZ2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.6042 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAT2B-3:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAT2B-3:3
3.1 lnc-MAT2B-3:17
4.0 lnc-MAT2B-3:17
4.1 lnc-MAT2B-3:17
5.0 lnc-MAT2B-3:17
5.1 lnc-ATP6V0E1-131:32
5.2 lnc-MAT2B-3:17