Transcript: lnc-MAT2B-3:36

Basic information

LNCipedia transcript ID: lnc-MAT2B-3:36 
LNCipedia gene ID: lnc-MAT2B-3
Ensembl Gene ID: ENSG00000253693
Ensembl Transcript ID: ENST00000522189
Location (hg19): chr5:164776036-165205694
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 734 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522189.1; CTC-535M15.2-001; OTTHUMT00000376060.1; NONHSAT104955
Alternative gene names: ENSG00000253693.1; CTC-535M15.2; OTTHUMG00000163870.1; AC008415.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -335.8714 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAT2B-3:36 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ODZ2-2:1
4.0 lnc-ODZ2-2:1
4.1 lnc-MAT2B-3:36
5.0 lnc-MAT2B-3:36
5.1 lnc-ATP6V0E1-131:36
5.2 lnc-MAT2B-3:36