Transcript: lnc-MATN1-1:2

Basic information

LNCipedia transcript ID: lnc-MATN1-1:2 
LNCipedia gene ID: lnc-MATN1-1
Location (hg19): chr1:31168512-31170375
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002330
Alternative gene names: XLOC_000768; linc-MECR-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.116 non-coding 
CPAT coding probability 16.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MATN1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MATN1-1:2
3.1 lnc-MATN1-1:2
4.0 lnc-MATN1-1:2
4.1 lnc-MATN1-1:2
5.0 lnc-MATN1-1:2
5.1 lnc-MATN1-1:2
5.2 lnc-MATN1-1:2