Transcript: lnc-MBOAT1-2:22

Basic information

LNCipedia transcript ID: lnc-MBOAT1-2:22 
LNCipedia gene ID: lnc-MBOAT1-2
Ensembl Gene ID: ENSG00000228412
Ensembl Transcript ID: ENST00000445568
Location (hg19): chr6:19730658-19734798
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011460; ENST00000445568; ENST00000445568.1; RP3-471C18.1-001; OTTHUMT00000039976.1; NONHSAT108004
Alternative gene names: XLOC_005633; linc-DEK-3; ENSG00000227116; RP3-471C18.1; ENSG00000227116.1; OTTHUMG00000014331.1; ENSG00000228412.7; RP4-625H18.2; AL022068.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.8932 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MBOAT1-2:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBOAT1-3:6
3.1 lnc-MBOAT1-3:6
4.0 lnc-MBOAT1-3:6
4.1 lnc-MBOAT1-2:22
5.0 lnc-MBOAT1-2:22
5.1 lnc-C6orf62-95:24
5.2 lnc-MBOAT1-2:22