Transcript: lnc-MCFD2-2:1

Basic information

LNCipedia transcript ID: lnc-MCFD2-2:1 
LNCipedia gene ID: lnc-MCFD2-2
Ensembl Gene ID: ENSG00000272814
Ensembl Transcript ID: ENST00000607950
Location (hg19): chr2:47183754-47184027
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 274 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607950.1
Alternative gene names: ENSG00000272814.1; RP11-15I20.1; AC093732.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.4999 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MCFD2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MCFD2-2:1
4.0 lnc-MCFD2-2:1
4.1 lnc-MCFD2-2:1
5.0 lnc-MCFD2-2:1
5.1 lnc-MCFD2-2:1
5.2 lnc-MCFD2-2:1

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